What are the best practices for using PHP templates with JavaScript frameworks like Qooxdoo?

When using PHP templates with JavaScript frameworks like Qooxdoo, it is important to ensure that the PHP code is properly separated from the JavaScript code to maintain clean and organized code. One way to achieve this is by using PHP to generate the initial HTML structure and then using JavaScript to manipulate the DOM and handle dynamic content updates. 

<?php
// PHP code to generate initial HTML structure
echo '<div id="content"></div>';
?>

<script>
// JavaScript code to manipulate the DOM and handle dynamic content updates
var content = document.getElementById('content');
content.innerHTML = 'Hello, Qooxdoo!';
</script>

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